Basic Information
VIS ID
TVIS42000350
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82884
Orient
+
Integrated sequence
CCTGAAACTAGAAGGGTGGTGGTGTCAGCTGTTGTTCACATGTGTCAGGATGACGAGTTTCCGGATCTACAAGATCCTCCAGATGAGGCCTAAGCAAAGG| |TGTAGAAGTGTGTCCCCCTCCATTCCACCCACTGATAATACGCCCGACAATAAAGTTGATGATATTGAATTCCACACCTGCTTGTGTTTGTGATTTTATT
Host Sequence
Chromosome
chrX
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
128852401/129718424 (Hg38)
End
128852401/129718424 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/8347371; hsa-mir-105-1/Downstream/4450954;
Nearest TSS
ENST00000429181/Upstream/63487; ENST00000371105/Downstream/20550;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/39882, chrX-CpG: 43/Downstream/125140
Upstream sequence
gtctttttgtagaatctgcaaatggatacttgtgagcactctgaggccttcgttggaaaaggaaatatcttcacataactactagagaaaaggtttctga
Downstream sequence
TGCTGGAGGCTGGGAAGGGAGAGACATATAGTACAGTAAGCATTGACCCCCCAGGAAAGGCTCACAGTGACCCACCCCCCTTCATAGTATGAGGGCAATG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate