Basic Information
VIS ID
TVIS42000351
Fusion event
EBV-chrY integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80384
Orient
+
Integrated sequence
GCGGCTACGGTGAGCATCCCTATGGCCTAAGTGTGTGATGTGTGTTTTTACCCATCACACAACAACAAGGTAAGTAATTTGTTGCCGTTGGTTTCAGCGC| |ATCGACACACGAGCCATAGACCAGTTTTTCGGATCCCAGATTTCAAATACCGAGATGTACATAATGTATGCCATGGCCATTCGACAGGCCATTAGAGATC
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
3887414/4019373 (Hg38)
End
3887414/4019373 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/1410119; hsa-mir-12120/Downstream/586747;
Nearest TSS
ENST00000430575/Upstream/440258; ENST00000426699/Downstream/17124;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/1083131, chrY-CpG: 43/Downstream/980542
Upstream sequence
gggttagggttagggttagggttagggttagggttagggtgagggttagggttagggttagggttagggttagggttagggttagggttagggttagggt
Downstream sequence
TCAGGTATTTGTCACTGGCAACATACGTCAATTTTAAATGGCAGACAAGAGTCCCAGTTGATTGAAAAAAAAATATGTGATGTAATTTATTATGCCATTA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate