Basic Information
VIS ID
TVIS42000352
Fusion event
EBV-chrY integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
92651
Orient
+
Integrated sequence
ATCAGGTGGTCTAACACGTAGCGCATCACTATAGGGCACGCGATGGAACATGCGTCGTTGCCGGCATTCTCAGCCCGTCTTCTTACCCTGTTGTTTCGGA| |GAATGGCCCAAAAATTGCAGATGTTGAGCGTGGCCATTAGCCCGCCCCATTCTCGCCCGTGGGCCTTGGCCTCATTTATAAATGCCTTGCATATTTTGTA
Host Sequence
Chromosome
chrY
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
13688888/11533212 (Hg38)
End
13688888/11533212 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/6926984; hsa-mir-12120/Downstream/1945965;
Nearest TSS
ENST00000430575/Upstream/1622414; ENST00000417071/Downstream/1129122;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/102780, chrY-CpG: 40/Downstream/256125
Upstream sequence
agggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtgagggttagggttagggttagggttagggttaggg
Downstream sequence
tcgaacggaacagaaaggaatggaatggaatggagcggaatggactcgaatggaatgtattcgaatgtaatggacctgaagggaatggaatccaatggaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate