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Viral Integration Site DataBase
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TVIS42000353
Basic Information
VIS ID
TVIS42000353
Fusion event
EBV-BACH2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
117440
Orient
+
Integrated sequence
GATGCCATCAACCAGCTGGAGCTCTGCCGGGTTGACACCCTCAACCCCCGAGTAGCCGGACGCCTAGCCTCCTCCCTCTACGTGTACGTTGATCCGGCCT| |ATACCAACAACACATCCGCATCAGGCACCGGAATCGCCGCCGTGACTCACGACAGGGCGGACCCTAACAGGGTCATCGTCCTGGGCCTGGAACACTTCTT
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
91004892/90295173 (Hg38)
End
91004892/90295173 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6G
Target gene
BACH2
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-29c-3p
;
hsa-mir-615-3p
;
hsa-mir-8064
;
hsa-mir-1277-5p
;
hsa-mir-190a-3p
;
hsa-mir-6083
;
hsa-mir-5011-5p
;
hsa-mir-656-3p
;
hsa-mir-410-3p
;
hsa-mir-3942-3p
;
hsa-mir-1324
;
hsa-mir-8485
;
hsa-mir-6797-3p
;
hsa-mir-6076
;
hsa-mir-6807-3p
;
hsa-mir-217
;
hsa-mir-509-5p
;
hsa-mir-509-3-5p
;
hsa-mir-4418
;
hsa-mir-6749-3p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-2355-5p
;
hsa-mir-15b-3p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-6832-3p
;
hsa-mir-620
;
hsa-mir-1270
;
hsa-mir-4531
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-5695
;
hsa-mir-3145-5p
;
hsa-let-7g-3p
;
hsa-let-7a-2-3p
;
hsa-mir-374b-5p
;
hsa-mir-374a-5p
;
hsa-mir-4791
;
hsa-mir-3201
;
hsa-mir-5692c
;
hsa-mir-5692b
;
hsa-mir-369-3p
;
hsa-mir-5583-3p
;
hsa-mir-4517
;
hsa-mir-557
;
hsa-mir-507
;
hsa-mir-4726-3p
;
hsa-mir-6764-5p
;
hsa-mir-1915-3p
;
hsa-mir-6840-3p
;
hsa-mir-142-5p
Nearest miRNA
hsa-mir-10398/Upstream/11755864; hsa-mir-1202/Downstream/17569;
Nearest TSS
ENST00000381078/Upstream/76928;
ENST00000569865/Downstream/1569;
Nearest CpG islands
chr6-CpG: 227/Target
, None/Upstream, None/Downstream
Upstream sequence
TAAAAAAAAGAGAATGACCAGATGTTTCTAAACATAATAACAACAAAATAGTTATTTTCACCTTTTTTAATACTGAAAAAATATTCAAGTAGCATTTGTT
Downstream sequence
ACGGCGACGGCGGTGACCGGGAGAGCAGGCTGCGAGGCGCGCCTCATCGGGCCACAGACAAACCACCCCGGCAGCGGCCGCGCCGGAACTTCCCTCAAGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Sample Information
×
Sample name
Raji
Sample type
Cell line
Gender
Female
CpG Island Information
×
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