Basic Information
VIS ID
TVIS42000355
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
4113
Orient
+
Integrated sequence
ACTCGGCCGTGATGGAGGCTATGACGGCGGCGAGTGACTACGCGCGTGGCCTGGGCGTGAAGCTGACCTTTGGCTCGGCCTCCTGCCCCGAGACCGGCTC| |GTCCGCCTCCAACTTCATGACCGTGGTGGCCTCTGTCTCCGCCCCAGGGGAATTCTCGGGTCCTCTGATCACGCCAGTGCTTCAGAAGACGGGCAGTCTC
Host Sequence
Chromosome
chrX
Cytoband
q12
Reference genome
GRCh37/hg19
Start
65342276/66122434 (Hg38)
End
65342276/66122434 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/103455; hsa-mir-105-1/Downstream/3900423;
Nearest TSS
ENST00000429181/Upstream/82309; ENST00000429547/Downstream/40115;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/299972, chrX-CpG: 27/Downstream/1421529
Upstream sequence
CTAAGAAAGAATAAAGATTAATATTATGCTTTTATTTTACTTAACGAATAAAATGCTAAATAATCTCCACACTCAACTATCATAAACTACAGCATGTCTT
Downstream sequence
accatgttaattacatgcaagtgtgttgattcaaggcctttgtcattaaatctgtacagaataaatgcccgcagtgccggcttgtcgggccacggctgct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate