Basic Information
VIS ID
TVIS42000360
Fusion event
EBV-ANO9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
68676
Orient
-
Integrated sequence
GGACTCCAACAACGCCCCAGACATACGGTCAGTCCATCTCCTTCACCTCCGCCACCTCCTAGGACCCCTACTTGGGAGAGTCCGGCAAGGCCAGAGACAC| |CCTCGCCTGCCATTCCCAGCCACTCCAGCAACACCGCACTGGAGAGGCCTCTGGCTGTTCAGCTCGCGAGGAAAAGGACATCGTCGGAGGCCAGGCAGAA
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
420903/420903 (Hg38)
End
420903/420903 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANO9
Nearest miRNA
hsa-mir-6743/Upstream/211497; hsa-let-7a-2/Downstream/147186;
Nearest TSS
ENST00000527297/Upstream/1488; ENST00000526558/Downstream/383;
Nearest CpG islands
chr11-CpG: 113/Target, None/Upstream, None/Downstream
Upstream sequence
AGGCTGTTTTAATAAATATAAAACTCAGGGTTTTATTTTTCCACAAATAAAGAAAAACTATCTTTTCTTCCAGGTGTAGGTGAGAAAGCAATTTGCCCTA
Downstream sequence
GATTTGGCTGTAAGCTGTCTTGAAATTATAAAGAACACACTCATGGATGAAATTGACTCTTGGAGGAAGGGCAGAACTCAAAGGACTGTATATAAATGGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate