VISDB Viral Integration Site DataBase

VIS ID

TVIS42000361

Fusion event

EBV-ITPR2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

160316

Orient

+

Integrated sequence

TCAGCCTCCAACAGGTGCCCGAGCCCCGCCTGGCGGACTTCATTCTCAAACAGTCCCGAGACCGGCTCCGGATTCACCGGCACCGCCAGGTGGTTACAGG| |AGACGTGGGTCCCCTCTGCCGTGGAAGGGTTGCCGTGGTTGGGCAGAACCATCAGCTCGCCCACACAGCGCCAGCAGGGCACAGAGGTGATGTAGAGGCG

Chromosome

chr12

Cytoband

p11.23

Reference genome

Start

End

26650659/26497726 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-935 ; hsa-mir-877-3p ; hsa-mir-324-5p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-187-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6752-3p ; hsa-mir-4793-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/623647; hsa-let-7i/Downstream/15825974;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/301529, chr12-CpG: 101/Downstream/334823

Upstream sequence

aataatatataagcaaatgagaaaatgcttaaaatagtaaatgaacaaatcagtttacaaaacaatatacacagtatgatcccaattgttaaaaaatata

Downstream sequence

tatacacgtacatcaaagtgttaatagtagatggtgagattataggttttattatcttctttacacttttcagtaagttccaaatttacctaataaatat