VISDB Viral Integration Site DataBase

VIS ID

TVIS42000362

Fusion event

EBV-CPPED1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

9608

Orient

+

Integrated sequence

CACTGCCCCGCGGGAAATACGTCCTACCCAGGAACCCGAAACAGTGTTTCCCAGAAGCTGTAAAAATAGAACGCCCTGGAACTGCCCCACTGTGCAATGC| |AGCTTTTAGCCATGCCATGCTCTATAAATCACTTCCCTATCTCAGGTAGGCCTGCACACCTTAGGTATGGAGCGAAGGTTAGTGGTCACTCTGCAGTGCC

Chromosome

chr16

Cytoband

p13.12

Reference genome

Start

End

12880212/12786355 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-4266 ; hsa-mir-6831-3p ; hsa-mir-6888-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-511-3p ; hsa-mir-4436b-5p ; hsa-mir-625-3p

Nearest miRNA

hsa-mir-1225/Upstream/65984; hsa-mir-11401/Downstream/1517612;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/217535, chr16-CpG: 41/Downstream/17153

Upstream sequence

TAGAAAGATTTTAAAAGGCATACCACCATCAAGATAAAAAACTACCTCGATACTATAATCAAGGTTTGGAGAGCATTGGAAAAGAAAAAGCATTTCCCCC

Downstream sequence

ACATGGGTTGGAGGAGAAACAGAAGCACAGTGACTTTCGTTTCCTTAAACTAACACTTCAGAGGGGCTTTGTTCAGGTTGTTAGTGGTGGTATATTTTTT