VISDB Viral Integration Site DataBase

VIS ID

TVIS42000364

Fusion event

EBV-PLCG2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

140472

Orient

-

Integrated sequence

GGCTAGACGTATGGCCTACCCAAGACGTTGGGGGTCTCGGGTAGGCCATGATTCTTCCAGGCATAGGTTACAACCAGTCACTGCTATCAAGCCTACTCAG| |TTCCCAACGCAGCACATACCCCCCGCCTCTCCTGCCATGAGGACTTATGGCAGTGTTTACTGTTCTGCTTTTACTCTTGGACCAGGCTGTCATTCTATCA

Chromosome

chr16

Cytoband

q23.3

Reference genome

Start

End

81829639/81796034 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-6726-3p ; hsa-mir-1294 ; hsa-mir-542-3p ; hsa-mir-8065 ; hsa-mir-4710 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-8053 ; hsa-mir-6717-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3202 ; hsa-mir-3194-5p ; hsa-mir-5589-3p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-3179 ; hsa-mir-6746-5p ; hsa-mir-1249-3p ; hsa-mir-1224-3p ; hsa-mir-1288-5p ; hsa-mir-4717-3p ; hsa-mir-6890-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-383-5p ; hsa-mir-504-5p ; hsa-mir-4802-3p ; hsa-mir-5683 ; hsa-mir-6732-3p ; hsa-mir-3674 ; hsa-mir-6875-3p ; hsa-mir-4452 ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4703-3p ; hsa-mir-4680-3p

Nearest miRNA

hsa-mir-1225/Upstream/184626; hsa-mir-11401/Downstream/892897;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/16077, chr16-CpG: 35/Downstream/215247

Upstream sequence

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Downstream sequence

AGTGAAGGCTGATAAGCAGGTTGATGGTAAGGGTTTGGGAGTCTTGTAGGAATCCAGGAGAATGAACAGTCTCATCGCTGGGCTGCATGGAAAGGGAAGT