Basic Information
VIS ID
TVIS42000365
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
103180
Orient
-
Integrated sequence
TAGAGAAGGAGAGGGAGCTCTATCTAAAGAAGATCCGCTCCATGGAGTCTCAGCTGCAGGCCTCCCTGGGTCCCGGCGGCAACAACCCAGCGGCGTCAGC| |CCCCGCCGCAGTTGCGGCAGAAGCCGCGTCTGTAGATATACTGACGGGCAGCACCGCCTCCGCAATCGAAAAGCTGTTCAACTCCCCGTCCGCCAGCCTG
Host Sequence
Chromosome
chr2
Reference genome
GRCh37/hg19
Start
94202283
End
(Hg38)
Orient
+
Location type
Intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
TAATACTCACTGTATATATGAAATATTTGCACAACACCACAGTCTTTTTTGATTTAATCCTTGCATGTGGTACTCTGCATTTATTTGTAACTGCATTTTC
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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