Basic Information
VIS ID
TVIS42000366
Fusion event
EBV-chr22 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
83096
Orient
+
Integrated sequence
AGAGAGACCTCGCATATTTGCAGAAGGGTCACTGAAACATCTTATCTTAAAACAGTTACACCTGAATAATGAAGAAAGCGTGGCTCAGCAGAGCACAGCA| |AGCCGATGCCGGGGGGGCATCTGGCTCCGAGGACCCACCAGATTATGGAGATCAAGGTAATGTGACACAGGTGGGATCTGAGCCTATTTCACCTGAGATT
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19666763/19679240 (Hg38)
End
19666763/19679240 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1698279; hsa-let-7a-3/Downstream/284513;
Nearest TSS
ENST00000624155/Upstream/12217; ENST00000490204/Downstream/35224;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/22523, chr22-CpG: 103/Downstream/34751
Upstream sequence
aggggggtggtactagaaagtggggcccttgggaggtgaagaggtcgtgagggtggagtcctcatgaatgggagtagtcccctcatcagaggggcccgga
Downstream sequence
gagctctctgccctctgccacgtgaggattaaacatgaagtaaaaaatctgcagctggaagcggctcccaccagaacccaacaaagctgcgtcttggtct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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