Basic Information
VIS ID
TVIS42000369
Fusion event
EBV-CD99L2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56275
Orient
+
Integrated sequence
AGGAGAGATAATCGGAGGCCGCCGAGGCCACCTTGTCCCTGATGTCCGCCGTACACCTGCGCACGTGCAGGGCCGCATTCTTGGACCGGACGGCCACGTT| |GTGGACAAAGGGGGGCACTGAGGCGGCGGGAGGGGCCCCATACTCTATCGCTGTCAACAGCGCCAAAAAGCGGACGTCCTCCTCATCTACCCCAGCCTGT
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
150066881/150898408 (Hg38)
End
150066881/150898408 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
CD99L2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-3064-3p ; hsa-mir-4722-3p ; hsa-mir-4796-5p ; hsa-mir-6727-3p ; hsa-mir-7150
Nearest miRNA
hsa-let-7f-2/Upstream/670325; hsa-mir-105-1/Downstream/269814;
Nearest TSS
ENST00000429181/Upstream/67160; ENST00000437772/Downstream/201;
Nearest CpG islands
chrX-CpG: 130/Target, None/Upstream, None/Downstream
Upstream sequence
GTGAAAATGTGGTTTTTAAGAGTAGTAGCTACTTATGGGGGTGTAGAAAGAATGGCCTCTCTCTTAGACAATTTCATTTTAAACATCATAGTCATCTTTT
Downstream sequence
GCAGCCACCGCAGGCCCGAGAGGCGGGGACCGTGCCGCTCATGCGCAGAGCGACCCCTGGGCCCACAAggcggggtccccgcgcggtccccgcgcgcccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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