VISDB Viral Integration Site DataBase

VIS ID

TVIS42000371

Fusion event

EBV-CAMTA1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

154617

Orient

+

Integrated sequence

TCGGGTAGAGGCTGGCAAAGTCCACCACCAGAACCGGGGAGTTGTAGAATCCGGACAGGGGCTGGATGACGGTGGCCCCCTGGTAGCCGTCCCGGTCAGA| |GGCCGAGGGCATGGGCAGGATAAAGTTTTCCTTTTGGGCGGCCGCCAGGAGGCAGGAGAACACGCGGATCTGCTGCCCATCGTCCAGCACCCGCCTGCAG

Chromosome

chr1

Cytoband

p36.31

Reference genome

Start

End

6922486/6862426 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p

Nearest miRNA

hsa-mir-12136/Upstream/432530; hsa-mir-101-1/Downstream/2004076;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/76120, chr1-CpG: 23/Downstream/99515

Nearest cancer related gene

CAMTA1(TSG, No orient, 0)

Upstream sequence

aaagctcagtcccaagagggcctacctggtatcacagattcacaggtctgtgactggaagcctccacaaatttgtgggttactggaggcaatcatcatcc

Downstream sequence

ttaactatctgtggcctactccttacattgaacttttttcttggaggggagtctttgggattgcctcttctatgcccttcccaggaagttaacctggaaa