Basic Information
VIS ID
TVIS42000372
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
63314
Orient
+
Integrated sequence
TCTTTGGGGACTTTCTGATACACGCCAGCTCCTTCAACAACGCCGAGGCCACTGGAACGCCCCTTTTCCAATTCAAGCAGAGTGACCCGTTCTCGGGCGT| |CGACGCGGTATTCACTCCTCTCTCCCTGTTTATCCTAATGAATCACGGCCGGGGTGTAGCCGCCCGGGTCGAGGCAGGTGGGGGCCTGACGCGGATGGCC
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
GRCh37/hg19
Start
12982497/12922677 (Hg38)
End
12982497/12922677 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/343654; hsa-mir-101-1/Downstream/3936272;
Nearest TSS
ENST00000473358/Upstream/5052; ENST00000617807/Downstream/22739;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/304041, chr1-CpG: 128/Downstream/590333
Nearby gene
RNU6-1072P(-18) ; PRAMEF29P(+3485) ;
Upstream sequence
gcgtggtggtggcgcatgcctataatcccagaatcccagctactcaggaggctgaggcaggagaatcacttgagcctgggaggcagaggttAGAGCAAAG
Downstream sequence
TTCCATTTCTAAACAAAAAAaaaacaaaaaacttccttcatgacagtcatttttgtgtctgtatgccttaccatacccaaaacaaattccaggtaccctt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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