Basic Information
VIS ID
TVIS42000374
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
127456
Orient
-
Integrated sequence
AGAGATTACCCTTCTCCTGGCCCACCTGCGCAAAAAGACAGCCCCCATCCACTGCCGTGATGCTCAAGTGTAAGCAGCCCGGGGCCCGCTTCATTCACGG| |GGCCGTGCACCTGCCATCGGGACAGATTGTCTTCCACACCATCCACAGCCCCACTCTTGCCTCGGCGCTGGGACTGCCTGGGGAAAATGTACCCATCCCG
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
23014321/22687828 (Hg38)
End
23014321/22687828 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/54462; hsa-mir-101-1/Downstream/31689;
Nearest TSS
ENST00000473358/Upstream/34639; ENST00000490436/Downstream/23011;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/10490, chr1-CpG: 162/Downstream/22502
Upstream sequence
tctgtggcactcagggagaggaagaaaggagcaagtgaatatagcaccttcaactgaaatatccaggcactcacactgggactgatcacagaaacaactc
Downstream sequence
gacccatggagaagagagaaaagcaaggtggggcaatagcccacctgggagcaacatgaagccaagagaactcccacccccagccaagggaagcagtgag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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