Basic Information
VIS ID
TVIS42000375
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10141
Orient
+
Integrated sequence
TGCCGTGTGAGAACAAGAGTAAAGCTGTGGAACAGATAAAAAATGCCTTTAACAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACAT| |TTTTATTAACTACATAGAAGCATACATGACAATTAAAGCCAGGTGATAATTCCATACCCTGGAAGCAGGAGATGGGTGCATTTCACCCCAACCCCCCCTT
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
23258238/22931745 (Hg38)
End
23258238/22931745 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/68519; hsa-mir-101-1/Downstream/112560;
Nearest TSS
ENST00000473358/Upstream/66586; ENST00000481879/Downstream/31433;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/146671, chr1-CpG: 126/Downstream/21315
Upstream sequence
gaagccccagaaatcatcttggaccatgaaataacctttggaatagaaaacatacacaaaggagcaaaacaaaagagcctggagccttgaCAGCTCTTGA
Downstream sequence
ATATTaaaaaaaaaaaaaaaaaaaaaaaaaCCACCTATTTCTTATAAACTATTGTTTTTTTTATGCCTATGCCTAACTGTACCTAATATCCTGGCTAACA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate