Basic Information
VIS ID
TVIS42000377
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
2271
Orient
+
Integrated sequence
GCGTGGAGATGGGCAGGCAGTTTGGCTTCGAGGTGCATAGAAGCCGGCCCTCCTTCCGTCAGTTCCAGGCCATCAATCACCTTGTCCTGTTTGACAACGC| |CCTTCGCAAGTACGATTCCGGCCAGGTGGCGGCGGGCTTCCAGAGGGCCCTTCTGGTGGCCGGGCCAGAGACCGCTGACACGAGGCCGGACCTCCGCAAG
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
25430132/25103641 (Hg38)
End
25430132/25103641 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/80055; hsa-mir-101-1/Downstream/802721;
Nearest TSS
ENST00000473358/Upstream/132776; ENST00000455902/Downstream/9478;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/171127, chr1-CpG: 45/Downstream/128431
Upstream sequence
CTTCTGAGTTTCACACCCCCTCAACTTGGAACAGAGAGAGTCCATGTTCAAATTGCTTGCTTTCTTCCTTTCCTTATCAAACAATCACCAAAGAGAATGT
Downstream sequence
GATGTGAGAAAGGTGTTCCCAAAACATGTTTTCTTGTCTGATAGGAACACTTTAACCAGTATATTCTAAATGATCAAAGATTACTCAAACTGAAACAAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate