VISDB Viral Integration Site DataBase

VIS ID

TVIS42000378

Fusion event

EBV-YARS integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

113766

Orient

+

Integrated sequence

GTTGTGCTGTACATGGGACCTCTTTCCCATTAGCAAGAACCCCCTGCAGGACACGTGACATGTCCGGGTGCATTTTGGGTGGGTTAAATCTCAGTCCCAC| |CACAAAGGGGGCATCCTCCGGTTTGAACATCAGACCCAACAAAGCCCGATGCCCAGTTATGGGTACGTAGTCGTTGTTCAGGGCCGTGCATGGCAGCAGA

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33256947/32791346 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-877-3p ; hsa-mir-423-5p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-6857-5p ; hsa-mir-4531 ; hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-4450 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4645-3p ; hsa-mir-5585-5p ; hsa-mir-6514-5p ; hsa-mir-4802-5p ; hsa-mir-532-5p ; hsa-mir-425-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-1200 ; hsa-mir-432-3p ; hsa-mir-555 ; hsa-mir-1193 ; hsa-mir-6081 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-4771 ; hsa-mir-8082 ; hsa-mir-3134 ; hsa-mir-4534 ; hsa-mir-4468 ; hsa-mir-1273f ; hsa-mir-6761-5p ; hsa-mir-6774-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4506 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-194-3p ; hsa-mir-3154 ; hsa-mir-3165 ; hsa-mir-3179 ; hsa-mir-3185 ; hsa-mir-3190-3p ; hsa-mir-4494 ; hsa-mir-4499 ; hsa-mir-4524a-3p ; hsa-mir-4709-3p ; hsa-mir-5693 ; hsa-mir-6077 ; hsa-mir-6745 ; hsa-mir-6795-5p ; hsa-mir-6880-5p ; hsa-mir-6887-5p ; hsa-mir-7-5p ; hsa-mir-8071 ; hsa-mir-1245b-3p ; hsa-mir-922

Nearest miRNA

hsa-mir-12136/Upstream/704339; hsa-mir-101-1/Downstream/541047;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/36967, chr1-CpG: 104/Downstream/25728

Upstream sequence

gtgggaattatgggcgttacaattcaagatgagatttgggtgggaacacagacaaaccatatcatatatatatttgggtcctattatttccatttcattt

Downstream sequence

attttgagttttttatctctactgatattacccatcacttcacccatgttattcaatttttccctgcagaacctctagccatcatagttatttaagatta