Basic Information
VIS ID
TVIS42000379
Fusion event
EBV-LOC105378641 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
65526
Orient
+
Integrated sequence
CTCCCTCGACTCTCAGTCACCCTACCTGGAGAGGGGGCAGTCGGTGATGGATTCTCGCTAGCCCGCCTCAGAGATGCCACCCAGTGTGCCACCTTTGTGG| |TGGCCTGCTCCATTCTTCAGGGATCCCCCACTTATGATTCCAGGGATATGGCCTCCATGGGCCTCGGGGTGCAGGGCCTGGCCGATGTCTTTGCGGACCT
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
34957504/34491903 (Hg38)
End
34957504/34491903 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378641
Nearest miRNA
hsa-mir-12136/Upstream/1159411; hsa-mir-101-1/Downstream/177696;
Nearest TSS
ENST00000473358/Upstream/314233; ENST00000338513/Downstream/263144;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/314480, chr1-CpG: 22/Downstream/269524
Upstream sequence
CAGTGTCCACTGCAGCCACATGGGGAGGACACAGCCTGGTCCAGGACCTTTCCATCAATTTAATTCCAATAGAATCCAGCCTCTTTCTTTGTATGATTTT
Downstream sequence
GAAGGTAGAGTTGGTTTTGTCTTCTTGCTTACTGCCTCCTTTCGCTTGTTTAAATATTTACCTTACATTTTCCCTACTCTGACTAGGGGAGACATTTTGC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate