VISDB Viral Integration Site DataBase

VIS ID

TVIS42000381

Fusion event

EBV-PPT1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

50487

Orient

+

Integrated sequence

GGCGGAGATGCAGCCGACGGCGGGGCCGCGGTGGGCTGCCCCCGAGGACGGGCGCCGGCCGCCAGCGCCCCCGTGGCCTTTGGCACGGGCCTGGCACCCA| |CCGCTTTAATTGTGGGGGTGGGCAGGGCAGCTGCATCTTGGGGCCTTTGTGCTTGCGTTTTTTGGGGGCGCGGTGCCAATGCACCAACTGGGGTGTGCGC

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

40546772/40081100 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-339-5p ; hsa-mir-29c-3p ; hsa-mir-320a ; hsa-mir-15b-5p ; hsa-mir-29a-3p ; hsa-mir-8055 ; hsa-mir-501-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p

Nearest miRNA

hsa-mir-12136/Upstream/1991771; hsa-mir-101-1/Downstream/673255;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/40069, chr1-CpG: 48/Downstream/15894

Upstream sequence

atgagctcagtgatcctcccatcttggcctcctaaagtgctgggattacaggtgtaagccattgcacctggccCACAATATCCTATTTTTAATGATGCGG

Downstream sequence

CTGATTCCCCTACCATCAGACTGTCACTCCTTAAGCCCCTCCTCTGTTAAATTCTGGATTGCCCATAGCCAGTCCAAATATCTACATCCTATCTCAGTCA