VISDB Viral Integration Site DataBase

VIS ID

TVIS42000385

Fusion event

EBV-SSX2IP integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

91747

Orient

-

Integrated sequence

CCTGAGGCCCTTCTTCCTTTTAACGGGAGGAAGAAAGGTGGGCTTTGAGGGGTGGGGGAATATGGGTCTCTCATCGCTCTCTTGGTGGACCGCTGCTATC| |CAAGGCTGTTCAGGTTCCGCCGCGTTGGAAGGACATGGAGTTTGACCACGGTTGGGCCTGGATGTCCGGCGCGACTTTGGGGCCCGCAGGCGCGGGGCCT

Chromosome

chr1

Cytoband

p22.3

Reference genome

Start

End

85115818/84650135 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-339-5p ; hsa-mir-92a-3p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-338-3p ; hsa-mir-374a-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-5189-3p ; hsa-mir-4524a-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-mir-101-1/Upstream/7589933; hsa-mir-11399/Downstream/483659;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/29042, chr1-CpG: 85/Downstream/39787

Upstream sequence

ctaaagttggaatgacacagagaagattagcatggcccctgcgcaaggatgatgtgcaaattcgtgacaagttccatatttttcaggaaacaacagatgc

Downstream sequence

tggagagaatgtggagaaattaggcatgctttgacagtgttggtgggagtgtaaattagttctagcattgtggaagacagtgtggtgattcctcaaggat