Basic Information
VIS ID
TVIS42000387
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82713
Orient
+
Integrated sequence
CTTGATTTGTCAATCCATGGCAGGCCCTGCCCTCAGGCCCCCGAGTGGCCTGTTCAAGAGGAGGGTGGCCAGGATGCCACCGAGGTTCTTGATTTGTCAA| |TCCATGGCAGGCCCCGCCCTCGGACCCCCGAGTGGCCTGTTCAAGGGGAAGGTGGCCAAAATGTCACAGGCCCTGAAACTAGAAGGGTGGTGGTGTCAGC
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
99276598/98811042 (Hg38)
End
99276598/98811042 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1M
Nearest miRNA
hsa-mir-101-1/Upstream/764871; hsa-mir-11399/Downstream/1470199;
Nearest TSS
ENST00000473358/Upstream/148819; ENST00000425113/Downstream/193234;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/148887, chr1-CpG: 74/Downstream/193334
Upstream sequence
ctctactaaaaatacaaaaaattagccatgcatggtggcatgcacctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaatctgggag
Downstream sequence
gcagaggttgcagtaagctgagatcgtgccactgcactccagcctgggtaacagagaaagactctgtctcaaaaaacaaaacaaaacaaaaaaaagacct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate