Basic Information
VIS ID
TVIS42000388
Fusion event
EBV-NTNG1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
157334
Orient
+
Integrated sequence
CCCTCATGCTCTTGCGCAGGGTGACGGTGGCCTGGTTAACGGGCACGCACTGGGAGACTGAGATGACATCCCCCAGGCGCTTGGCCGCCACCGCCTTACC| |GTAGATGCTGGACATGACGGTGGTTGGATTAATCTTGGTTAGTTCTCTCAGCACCATGTTCTGCCTCTTCTGCTCCAGGCACCAGGCCCGCGCAAGGTCT
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
107791607/107248985 (Hg38)
End
107791607/107248985 (Hg38)
Orient
+
Location type
Intronic
Target gene
NTNG1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-129-5p ; hsa-mir-2054 ; hsa-mir-3613-5p ; hsa-mir-6885-3p
Nearest miRNA
hsa-mir-101-1/Upstream/6967677; hsa-mir-11399/Downstream/648238;
Nearest TSS
ENST00000473358/Upstream/100391; ENST00000477948/Downstream/11818;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/107144, chr1-CpG: 22/Downstream/231625
Upstream sequence
tagcttgagcccaggagtttgagaccagcctgggaaacatagtgggaccctatctctaccaaaaaaaaaaaaaaaaaaaaaaaaaacattttttttaatt
Downstream sequence
aactgggcatggtgacatgtgcctgtaatcccagctactcaggagactgaggtgggaggatcatgtgagcccaggtcaaggctgcaaggagccatgatcg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate