Basic Information
VIS ID
TVIS42000389
Fusion event
EBV-INKA2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
138657
Orient
+
Integrated sequence
GGGGAAGGAGCTGACACGATTGAGTAGAAAGGGCCAAAAATACACCAGCTATAAGGAATTGCTCAGGCCAAAGTTGTTCCTCAGGTGGCTTTAGGCCTAA| |TGTAGGCAATTGCGTGCCTAGAACATTGCTAATGTGCCCTGGGTTTCCTGCCTTCATGCAAATATTCTACCTCCCCCGGCCTGGTGCAAAATGTCTGCCT
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112295060/111752438 (Hg38)
End
112295060/111752438 (Hg38)
Orient
+
Location type
Intronic
Target gene
INKA2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-193b-3p ; hsa-mir-6807-5p ; hsa-mir-744-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-4734 ; hsa-mir-6849-3p ; hsa-mir-6504-3p ; hsa-mir-596 ; hsa-mir-449b-3p ; hsa-mir-4999-3p ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-5582-5p ; hsa-mir-6794-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-4267 ; hsa-mir-5690 ; hsa-mir-4639-3p ; hsa-mir-1306-5p ; hsa-mir-8064 ; hsa-mir-4643 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-4532 ; hsa-mir-2276-5p ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-519d-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3939 ; hsa-mir-3679-3p ; hsa-mir-328-3p ; hsa-mir-4449 ; hsa-mir-6851-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6886-3p ; hsa-mir-6734-3p ; hsa-mir-1470 ; hsa-mir-6887-3p ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-1825 ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p
Nearest miRNA
hsa-mir-101-1/Upstream/2153471; hsa-mir-11399/Downstream/709332;
Nearest TSS
ENST00000473358/Upstream/13014; ENST00000524894/Downstream/2807;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11783, chr1-CpG: 96/Downstream/2981
Upstream sequence
gacagggaaggttccagaaggtggggacacctgaatcctaagagtgtgtgggtatccagataaggaactggcttgggcaaaggcacagaggcaacaaata
Downstream sequence
atgttgcaggtgcacaacaatgacaagcagttggttttgctggaacataggggcCTGAAAATGTAGGACTTTCTATTATATTGACCCATATGAAACTGCt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate