Basic Information
VIS ID
TVIS42000390
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
73912
Orient
+
Integrated sequence
AGGCCAGGGGAAGGCGCCCCCTGTAGGCGTCTATCGTCCTTGCCACAGCGCGGATCTCTCGCGAGTCCCGCCGCAGTTTCTCGTGTGCAAAGTGGGCAAA| |AGCCTCGGTCTGCTCCGCCCATGCCGAGGAGCCAAAGACCTCCCCCAGCTCGGCCAGGGACGTGACGGCGGCCAGGCTCTGACCAGACTCGGAAGTAAAT
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
112762153/112219531 (Hg38)
End
112762153/112219531 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/2620564; hsa-mir-11399/Downstream/242239;
Nearest TSS
ENST00000473358/Upstream/228995; ENST00000502356/Downstream/140997;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/228380, chr1-CpG: 25/Downstream/176342
Upstream sequence
GTGTAAAGCCACGCTGCAAGCTGGGAGTGAGCTGCTGACAGACGCAGGCCCACATGCCCTGAGGCTGAAAGGCAGGGATAGGAGCCAGGGCCAGACCCCC
Downstream sequence
GAGGGGACTCTAGGGAGTTCAGATGGGGCTTCGCCATCAGGCCTGGGAGCCAGAGCCACGGCCAGCTGCTCTCTGCTCACGGGGAACGGGACGTCAAGAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate