VISDB Viral Integration Site DataBase

VIS ID

TVIS42000391

Fusion event

EBV-PTGFRN integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

80360

Orient

+

Integrated sequence

ACACTTCTTCAAGCGATTGGAGCCGCGGCTACGGTGAGCATCCCTATGGCCTAAGTGTGTGATGTGTGTTTTTACCCATCACACAACAACAAGGTAAGTA| |ATTTGTTGCCGTTGGTTTCAGCGCATCGACACACGAGCCATAGACCAGTTTTTCGGATCCCAGATTTCAAATACCGAGATGTACATAATGTATGCCATGG

Chromosome

chr1

Cytoband

p13.1

Reference genome

Start

End

117522160/116979538 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-877-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-218-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3185 ; hsa-mir-2115-3p ; hsa-mir-371a-3p ; hsa-mir-5197-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-106b-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-1236-3p ; hsa-mir-877-3p ; hsa-mir-3922-5p ; hsa-mir-6881-3p ; hsa-mir-554 ; hsa-mir-6828-3p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6502-5p ; hsa-mir-1301-5p ; hsa-mir-4522 ; hsa-mir-767-3p ; hsa-mir-6728-3p ; hsa-mir-139-5p ; hsa-mir-7112-5p ; hsa-mir-6812-3p ; hsa-mir-1972 ; hsa-mir-330-3p ; hsa-mir-15a-3p ; hsa-mir-4438 ; hsa-mir-6835-3p

Nearest miRNA

hsa-mir-101-1/Upstream/307721; hsa-mir-1182/Downstream/115105;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/34515, chr1-CpG: 64/Downstream/80228

Upstream sequence

GGGAGGTACTGAGAGATTAGAGAAACACACAAAAGCCGATATTAGTCTAAGTTCCTCCTCAGTGCCCTGATCTCATCTGACTTGGCCAGCAACTGAGTAG

Downstream sequence

TTGTTATATTGCTTCCAATCTTTTTATACTAAATATGTAGCTTTGACAGTGACTGTAATTCAAGCGAAGTTTTTTTCCCTACTGCTTTTCTATCAGTATT