VISDB Viral Integration Site DataBase

VIS ID

TVIS42000393

Fusion event

EBV-UBAP2L integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

151773

Orient

+

Integrated sequence

TGTGTCAGTTTGCAGGGCCATCCTCGCACTCAGGTGGACTGGCTAGGCACCCTTCTGAAGTATCTGGCGGTGACTGTCACCTGGTTCTTGAGAGAGTCCA| |TAAAATGGCTGAAGCTCCAGGCGTATAGTATAATGAGCAACAGGGCCAAACAGGCGGCGGGGCCTGGGTAGTAGCGGGCAACGAGAGACTCTGTGCAATC

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

154210249/154237773 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-760 ; hsa-mir-93-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-125b-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-6793-3p ; hsa-mir-5092

Nearest miRNA

hsa-mir-101-1/Upstream/44030; hsa-mir-1182/Downstream/737920;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/16461, chr1-CpG: 43/Downstream/34461

Upstream sequence

TTTCTTTTTCCCTACCTAATTTCTTTGAAGTTTCATTTATCTGGTAGTTTCAGGGTAGACTTTGACCAATTTAAATTGGAAAGAAACATTTTCAGTATTA

Downstream sequence

TGTTAGTTTTTGTCTATATGTGACATGATTTAGTTTCAGTTCCTACAACTTACCCTGGCTCTTAAATTTTCTTATATTGTATAGTATTATTTAATTTCTC