VISDB Viral Integration Site DataBase

VIS ID

TVIS42000394

Fusion event

EBV-KIRREL1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

134454

Orient

+

Integrated sequence

AGCGGCGCAAGCCTGCCATGGCGTCAGCTGGTATGCCGGGCGCCTATCCAGTCCAGACGCTTTTCCGCCACGGGGAGCTCTTCCGCTTCATCTGGGCCCA| |CTACGTGAGGCCCACGGTGGCGGCAGACCCCCAGGCCTCCATCAGCTCTCTTTTCCCCGGGCTGGTTTTGCTGGCCCTGGAGCTGAAGTTGATGGATGGG

Chromosome

chr1

Cytoband

q23.1

Reference genome

Start

End

158068803/158099013 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-99b-3p ; hsa-mir-615-3p ; hsa-mir-3685 ; hsa-mir-155-3p ; hsa-mir-3667-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4640-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-mir-101-1/Upstream/1162769; hsa-mir-1182/Downstream/1800966;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/104856, chr1-CpG: 38/Downstream/14394

Upstream sequence

GTACAGAAATTATAAAAGATTCAGGCAAAGGACTCATCAATATTTGCTTCTCCTGTGACACTGGGGTTTATCATACTTATCATGCtgatatggtttggct

Downstream sequence

gtgtcctcacccaaatctcatcttgaattgtaactcccacaattcccatatgtcatgggaggtgactgaattacaggggtgggtctttcctgtgctgttc