Basic Information
VIS ID
TVIS42000395
Fusion event
EBV-CASQ1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
44596
Orient
+
Integrated sequence
ATTTTCCACACCTGGACACCGACTTCACGCTATGCGCCGAGGCCTTTGAGGCCGTGTAGTTTCTGTGGTGCGGATGCATTAGGCGGCGCAATGCGGGATC| |TGCCGGTCGCTGTTGGCGTGCATTCACGGCATCTGGGGTGACCGGGGCCATCGGGTTTACTTTTCACACGTAGACCTGGGAAGTTTGATAGGACTGTACC
Host Sequence
Chromosome
chr1
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
160167813/160198023 (Hg38)
End
160167813/160198023 (Hg38)
Orient
-
Location type
Intronic
Target gene
CASQ1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-mir-101-1/Upstream/297944; hsa-mir-1182/Downstream/1029163;
Nearest TSS
ENST00000473358/Upstream/5385; ENST00000467691/Downstream/187;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/98811, chr1-CpG: 61/Downstream/7277
Upstream sequence
TAATGGACTATTTAATACTCCCAGCATCACTTATGCATCTTCCTAGAGTGCCTTTCCCTAATTTGGGCTTGTTAGTGGTATTTGTCCAAGAGGAAGTCAA
Downstream sequence
GTCAAATGGTAGCCTCTAAGAGGAATCTTCACCAAATACAATCCAAAATTAAAACTTAAGAACTAGTCTTCGCTGCTGTGCAGTATGACCTCTTATGCAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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