VISDB Viral Integration Site DataBase

VIS ID

TVIS42000396

Fusion event

EBV-KLHL20 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

9762

Orient

+

Integrated sequence

CACACCTTAGGTATGGAGCGAAGGTTAGTGGTCACTCTGCAGTGCCTGGTGCTGCTTTACCTGGCACCTGAGTGTGGAGGTACAGACCAATGTGACAATT| |TTCCCCAAATGTTGAGGGACCTAAGAGATGCCTTCAGTCGTGTTAAAACCTTTTTCCAGACAAAGGACGAGGTAGATAACCTTTTGCTCAAGGAGTCTCT

Chromosome

chr1

Cytoband

q25.1

Reference genome

Start

End

173710101/173740962 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-429 ; hsa-mir-200a-3p ; hsa-mir-200c-3p ; hsa-mir-141-3p ; hsa-mir-200b-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4709-3p ; hsa-mir-5692a ; hsa-mir-6508-5p ; hsa-mir-8067 ; hsa-mir-4662a-5p ; hsa-mir-8078 ; hsa-mir-5680 ; hsa-mir-511-5p ; hsa-mir-431-5p ; hsa-mir-4635

Nearest miRNA

hsa-mir-101-1/Upstream/1596318; hsa-mir-1182/Downstream/2227408;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/71056, chr1-CpG: 67/Downstream/83188

Upstream sequence

GTGTTAAAGAGTCTACTGAATGCTAATACATTCTCCAACAGTGTTGAAGAATTTATAATGGTAAATGTTGTTGTTTTTTTTTTTCTTCCCCCCCCCCGCC

Downstream sequence

Attttttgtttgtttgtttgttttgttttgagtctgggtctcactctgttgcccaggctggagtatagtggcacaatcatagctcactgtaatctcgaac