Basic Information
VIS ID
TVIS42000398
Fusion event
EBV-LOC647070 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
43955
Orient
+
Integrated sequence
CCCTACTAGGTCCACGGCCAGCTCGTAGGTGGGGCCTATGTTTTCACATAACAGTTTCAAGCAGGTCTCTGGGATGTGAAGGGAGGTGCCCTGGAGCAGG| |AGATGCATGATTAGGCGCCCTTTTCCATTTGTGCTGAAGATGGGGCAGATGGTGCCACAAAAGTGTCCGGTGACCAGGTAAGCGTAGAGAAGGCTGGGTT
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
182805071/182835936 (Hg38)
End
182805071/182835936 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC647070
Nearest miRNA
hsa-mir-101-1/Upstream/2397546; hsa-mir-1182/Downstream/9880392;
Nearest TSS
ENST00000473358/Upstream/17298; ENST00000483416/Downstream/3433;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/45974, chr1-CpG: 85/Downstream/3241
Upstream sequence
ATACAATTAAAGTGCTTAAAATATTAACTCCTATAATTAAGACTACATTCTAAATTGTATCTTAAATGTGAAATAAAAAGACACACATCATATGATTTAC
Downstream sequence
ctccaagaagacaacagatctacctgttcactagtgtatttccagcatctagcacagtgtctatatatactggacactcaatatttgtagaatgaataaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate