Basic Information
VIS ID
TVIS42000399
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
6770
Orient
+
Integrated sequence
GTGTGGCTGTAGCCACCCGTCCCGGGTACAAGTCCCGGGTGGTGAGGACGGTGTCTGTGGTTGTCTTCCCAGACTCTGCTTTCTGCCGTCTTCGGTCAAG| |TACCAGCTGGTGGTCCGCATGTTTTGATCCAAACTTTTGTTTTAGGATTTATGCATCCATTATCCCGCAGTTCCACCTAAACGGGGCTTAACGTTGCATC
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
187787703/187818572 (Hg38)
End
187787703/187818572 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/7380182; hsa-mir-1182/Downstream/4897756;
Nearest TSS
ENST00000473358/Upstream/176956; ENST00000569873/Downstream/399828;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1137623, chr1-CpG: 56/Downstream/4989930
Upstream sequence
AGCGCCTGATGTAGACCCTCCCTCTGAGAATAGCCGTGGAGCCATGTAGAGAGGTGTAGCTCAGCACATCTCAACTACCAGTCAGCTTCCCTTTGAGAAC
Downstream sequence
TTCTGTGCTCACTTCCTGTTTTCAGAGATTCCAGGGCAGGGGAAAAAAAAAATCAGTTGAACTTCAAACCTCCTAGAGGAGATTGTAAAGGCATAGAGTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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