Basic Information
VIS ID
TVIS42000402
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135053
Orient
+
Integrated sequence
GCCGCCATGCTCAGGGCCACGGCGTGCCAGAGGCCCTCGTAGTCGTGCGCATCCGAGAGGATGGCACGGTCCAGAAGCAGATAGCCGGCCAGGCAGAGGA| |AGGCCACAAAGAGGGGGCGAAGGCGTGCCCGAACCCGGGTTTCATGCTCGTCTGCACCCCAGTGGACAAGGCAGTAGAGGACACCCACCACCAGGCGGTT
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
215476559/215303216 (Hg38)
End
215476559/215303216 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3225531; hsa-mir-1182/Downstream/4814637;
Nearest TSS
ENST00000473358/Upstream/219699; ENST00000448333/Downstream/91202;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/219923, chr1-CpG: 76/Downstream/263948
Upstream sequence
acctccttgacttcagtagcaccctgcactttatacaggaaatgaggatacctgtttgtgtgcatctgtctccccaagtgcagaggctctgtttactttg
Downstream sequence
ttccatttttgtatctctagcacttggctggtttatactaggtgttcagaaaatttttgttgaatgaTTAGAGATGTTTTGTAGATTGaatgcaaataat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate