Basic Information
VIS ID
TVIS42000403
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
49475
Orient
+
Integrated sequence
CCCAGTTCTGCTACGAAGAGTACGTGCAGAGGACTTTTGGGGTGCCTCGGCGCCAACGCGCCATAGACAAGAGGCAGAGAGCCAGTGTGGCTGGGGCTGG| |TGCTCATGCACACCTTGGCGGGTCATCCGCCACCCCCGTCCAGCAGGCTCAGGCCGCCGCATCCGCTGGGACCGGGGCCTTGGCATCATCAGCGCCGTCC
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
GRCh37/hg19
Start
228941633/228805886 (Hg38)
End
228941633/228805886 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/343734; hsa-mir-1182/Downstream/2213942;
Nearest TSS
ENST00000473358/Upstream/70809; ENST00000323223/Downstream/232388;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/50682, chr1-CpG: 70/Downstream/465013
Upstream sequence
acatgtgggaaatgagatattgtaaatttgtgccttgtggtgccattacaatttctcaaatcatcacttgtgaatgtttggaatgtagtgcctattaaag
Downstream sequence
accaggctttggaaggccaagtggctagggtacttgactgtcacgacagtgacagtgactgtaaagactgagatagactagctatttctgatgaaactgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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