Basic Information
VIS ID
TVIS42000405
Fusion event
EBV-CATSPERE integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
113542
Orient
-
Integrated sequence
TTTTCACTGAAATTATTGACACCTTGACCAAGAGCTTCGACTCCAAGCGTGTAGAGGTCAACAAGGAGACCAGCACCATCACGTTTAGGCACAGTGGGAA| |AATCTCCAGCACCGTAATGTGTGCCACCTGCTTCAATAAGAATGTAAGACCTGACGTTTCAGTACTTGGCAATTGTAGAGCATAGCCCGGCTGTAAAGGT
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
244792661/244629359 (Hg38)
End
244792661/244629359 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
CATSPERE
Nearest miRNA
hsa-mir-101-1/Upstream/1283104; hsa-mir-3124/Downstream/2572608;
Nearest TSS
ENST00000473358/Upstream/11769; ENST00000487449/Downstream/10569;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/167741, chr1-CpG: 99/Downstream/23538
Upstream sequence
ttacctgtttaccttgattttttaaattgtatttttgttttataggtcctgtgagatttacgctttaaagacgatgtgttttgatgtgttttcaggattt
Downstream sequence
atttcaagattttgagcgccttctagcagttcttgtggtgctggcttggtagtggcaaattctatctgcatttgtttgtctgaaaaagactgtaaccttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate