Basic Information
VIS ID
TVIS42000406
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
608
Orient
-
Integrated sequence
TGGCATGACGTCAACTTTACTTTTATTTCAGTTCTGGTGATGCTTGTGCTCCTGATACTAGCGTACAGAAGGAGATGGCGCCGTTTGACTGTTTGTGGCG| |GCATCATGTTTTTGGCATGTGTACTTGTCCTCATCGTCGACGCTGTTTTGCAGCTGAGTCCCCTCCTTGGAGCTGTAACTGTGGTTTCCATGACGCTGCT
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
248429527/248266225 (Hg38)
End
248429527/248266225 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/1064165; hsa-mir-3124/Downstream/560152;
Nearest TSS
ENST00000473358/Upstream/27296; ENST00000317861/Downstream/7611;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/328801, chr1-CpG: 49/Downstream/425504
Nearby gene
OR2T33(+6627) ;
Upstream sequence
GACATGTCAGTATCTGAACAAGAAGATTTCGAAATCTCTCTAGCCTTTCTGGTGCCCTGTTGAACAGCCTTCTTGGTGTGATGGAGTATTCAGGGTTTGA
Downstream sequence
ATAAGATTACTTTTTTGTTAACTGACTTTGGTGCCTGCGTCTGGGCTGGATATAAATGTTTAAGGATATGTTAAGCTGTGGTATACACCTAAGATGTGTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate