Basic Information
VIS ID
TVIS42000407
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
86204
Orient
-
Integrated sequence
GGGACTCTAGACAGTCACCCGACAATGAGCGGGGAGATAATGTACAGACTACCGGCGAGCATGATCAGGACCCTGGGCCGGGGCCTCCATCCAGTGGGGC| |TTCTGAGAGATTGGTACCAGAAGAGTCATACTCAAGAGATCAGCAACCTTGGGGGCAAAGCAGGGGTGATGAAAACAGAGGCTGGATGCAGCGCATCAGG
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
8970266/8928303 (Hg38)
End
8970266/8928303 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/2776026; hsa-mir-107/Downstream/3202457;
Nearest TSS
ENST00000439456/Upstream/30314; ENST00000456526/Downstream/41822;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/414164, chr10-CpG: 72/Downstream/478872
Upstream sequence
gcagttagccaagatcgcaccactgcactccagcctgggcaacagagggagactctgtctcaaacaaaacaaaacaaaacaaaaAACTGTAAGTCACTTA
Downstream sequence
TTTTAGCTATCTTTTTTGGGTAGTTTTATTTTAAAATCTAAGTCTTGGAACTTGTGATAAAGTTGAGCCTTACATATATTAAATTTTAAACCAGAACTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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