Basic Information
VIS ID
TVIS42000408
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81550
Orient
+
Integrated sequence
CGGTAGCACAGGCCCCACCTACGCCCTTGCCCCCTGTATCTCCAGGGGATCAACTCCCAGGTGTTTTTAGCGACGGGCGAGTGGCGTGTGCACCAGTACC| |CGCCCCGGCTGGGCCTATTGTCCGGCCCTGGGAGCCATCCCTGACACAGGCTGCGGGGCAGGCCTTTGCACCCGTTAGACCACAACACATGCCAGTAGAA
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9448139/9406176 (Hg38)
End
9448139/9406176 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/3253899; hsa-mir-107/Downstream/2724584;
Nearest TSS
ENST00000439456/Upstream/130343; ENST00000429539/Downstream/353061;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/892037, chr10-CpG: 72/Downstream/999
Upstream sequence
CTTTGAGTTATCTTCTGGCGATATCAATGATGTTACAACACTGGCGATGGCTTAGCCTGAACAGTGACAAGAGGCTAAGAGCTTCTGTACTGATGTCTGA
Downstream sequence
TTATGTAATATTCGAGGTGTGCCAAAAACTTCTAATCAGGATAAATGAGTTCTGGGGGGTGAAAAGAAAAATGCATTACCTATGTTAGCATAGATTCTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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