Basic Information
VIS ID
TVIS42000409
Fusion event
EBV-LINC00710 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
144908
Orient
+
Integrated sequence
CTTGAGTGTGAAAGTTTGTAAAAAAATTCATAAAATGTCACTAATTCCTCTTACCTGTTTAGGGTATTGTGCAATTCTTCAGCCTGCCTATTTTCAATTT| |GCCTAAGGTGGCAATTTAAGATGTGGTTAATTAACCATTTTCCTGTCTGACACCACTGCATGGGCAACCGGGTTCCATGGCACATTTAGAGATAAACATA
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
10988312/10946349 (Hg38)
End
10988312/10946349 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00710
Nearest miRNA
hsa-mir-3155a/Upstream/4794072; hsa-mir-107/Downstream/1184411;
Nearest TSS
ENST00000439456/Upstream/147725; ENST00000420825/Downstream/13802;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/679723, chr10-CpG: 158/Downstream/71130
Upstream sequence
CTGGCAGCAGAAAATACTAGTCCATTGACATGTAAGATTTTTTGTGTTGGGAAATTACCCTAACAGACATTATGATGTAATAGAATGCTACAATAATGAA
Downstream sequence
AACTGCATGGCTGTGGCAAAGTAATCAGCAGACAGAATGAACAGCCCTGAAATTTATTTGAAAATAGAATGTACATAGGGAAGGGATGCATTTATTTCAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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