Basic Information
VIS ID
TVIS42000410
Fusion event
EBV-BEND7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80811
Orient
-
Integrated sequence
CCCGGGGATCGCCAGTGGTTGTATGTTCAGAGCTCCGTGGGTAACATTGTACAGAGCTGTAATCCCCGCTACAGTATTTTCTTTGACTATATGGCTATAC| |ACAGGAGCCTCACGAAAATCTGGGAGGAAGTTTTAACACCTGACCAGCGTGTTTCATTTATGGAATTCCTAGGATTTTTGCAGAGAACGGATTTGTCCTA
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
13530377/13488377 (Hg38)
End
13530377/13488377 (Hg38)
Orient
+
Location type
Intronic
Target gene
BEND7
Nearest miRNA
hsa-mir-3155a/Upstream/763024; hsa-mir-107/Downstream/894823;
Nearest TSS
ENST00000439456/Upstream/7304; ENST00000438431/Downstream/8552;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/13630, chr10-CpG: 163/Downstream/39751
Upstream sequence
TGTTATATTTGGGTAAGTCCTCtttattatttatttatttattttttgagatggagttttgctcgtccgccaggctggagtacaatggcgcaatcttggc
Downstream sequence
tcactgcaacctccatctcctgggttcaagcaattctcctgactcagcctcctgagtaggtgggattacaggcatccaccactgtgcccagctaattttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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