Basic Information
VIS ID
TVIS42000411
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42147
Orient
+
Integrated sequence
TCCCTCTTAATTACATTTGTGCCAGATCTTGTAGAGCAAGATGGCCTATTCAACAAGGGAGATACTGTTAGCCCTGTGTATACGGGACAGTCGTGTGCAT| |GGAAATGGTACCCTGCATCCTGTGTTGGAGCTAGCAGCAAGAGAAACACCTCTCCGCCTTTCGCCAGAGGACACTGTAGTTCTGCGTTATCATGTGTTGC
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
24855223/24566294 (Hg38)
End
24855223/24566294 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/290513; hsa-mir-107/Downstream/3722964;
Nearest TSS
ENST00000439456/Upstream/23874; ENST00000610158/Downstream/23748;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/870245, chr10-CpG: 209/Downstream/156374
Upstream sequence
aggcgctttgaggccaatggtagaaaaggaaatatcttcgtataaaaactagacagaatcattctcagaaactactttgtgatgtgtgcattcaactcac
Downstream sequence
agagtttaaccttacttttcatagagcagtttggaaacactctttttgcagaatctgcaagtggatatttggacctctttgaggccttcgttggaaacgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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