VISDB Viral Integration Site DataBase

VIS ID

TVIS42000412

Fusion event

EBV-GPR158 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

146278

Orient

+

Integrated sequence

TATTATTAATTTCTTGTTAACACTAATTCTGTTCTATGACCCTGTGTTTTTCAGATGCCGTTGAACGTGTCACTGAGCTGAATTTGGACGCAGCTACTTG| |ACCTTTGCCCCCGTGCCTCCAGCGCTGATAAGTGCTGCGTCCACTTTGTGTTACAGGTGGGCCAAACCTCCAGAATATCAATTGGTGGGGCCTTGGTGGG

Chromosome

chr10

Cytoband

p12.1

Reference genome

Start

End

25686883/25397954 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-4666a-5p ; hsa-mir-4772-3p ; hsa-mir-4699-3p ; hsa-mir-944 ; hsa-mir-629-3p ; hsa-mir-374a-3p ; hsa-mir-136-5p ; hsa-mir-1266-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p

Nearest miRNA

hsa-mir-1265/Upstream/1122173; hsa-mir-107/Downstream/2891304;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/221244, chr10-CpG: 96/Downstream/536038

Upstream sequence

CACTAGGAAATGTTTgggtctctcaagaggttgtagtcaaggtgtaggctggggctgcagtcatctgaaggcttgactggggctggaggattcatttcca

Downstream sequence

aagtggctcattcatatggctggcaagttgagttcctcttcacttgggtgtctccacgggctgcctgaatgttctcacaaagtggcagctcatttcctca