Basic Information
VIS ID
TVIS42000414
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
124032
Orient
+
Integrated sequence
GATTGGGCATAAACAGGCCCACTGGGAAATAGTAGCTGTACTGCATTCTTCTGTTGAGGGGGTATGGGGACTGAGTGTCATTGTACATCTTTTGCAGGCT| |TTCCACGGCCACCGCGTGGTTGCCCAGCTTGATGACGGCGGCTGAGATCGGCACCCGGGGCTGATCCTCGACCCCTGCGGCCACAGCCGGCAGGTCAGAC
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26132338/25843409 (Hg38)
End
26132338/25843409 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/1567628; hsa-mir-107/Downstream/2445849;
Nearest TSS
ENST00000439456/Upstream/191634; ENST00000376301/Downstream/90301;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/666699, chr10-CpG: 96/Downstream/90583
Upstream sequence
AGAAGTGTGTAAGTTTTTAACCAGCCAAATGATATAATGAAAGCATTTGCTTGGGGATATTCACTTAGCAGAGTATGCAATTGGAATTGGAATAGTCTAT
Downstream sequence
CAAGGTAGAATCCTTAAAGTCATTCTTGTGTTCTATGTACTTAACCAGTCAATGGAATCTTGCCCATTATACTTAGGCCTTTGGAGTATGAGCCATGGCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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