Basic Information
VIS ID
TVIS42000415
Fusion event
EBV-GAD2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152668
Orient
+
Integrated sequence
CCGTTGCATTGACGGAAGTCATGTTGGCCACCAGGGTCCCCACGGTGGACCCGGGGGCCATGGTGGAGAGCATCTTGCTGGTCAGAGCCAGACTGGGTGG| |TGTCTGCAGCAAAAGAGGAACTTGCCCAGGCAGTCAGTTATTTTGCATGCCACCTCCCTGCCTGGTGGACTTCCAGACTATTTTCTGCATTCGCCCTTGC
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26513439/26224510 (Hg38)
End
26513439/26224510 (Hg38)
Orient
+
Location type
Intronic
Target gene
GAD2
Nearest miRNA
hsa-mir-1265/Upstream/1948729; hsa-mir-107/Downstream/2064748;
Nearest TSS
ENST00000439456/Upstream/6317; ENST00000356785/Downstream/213693;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/6005, chr10-CpG: 53/Downstream/167195
Upstream sequence
taaatctctctctctgtctgtacatatatctattcatatatagtatataattttacatagttcttaatatgtattctgtatcctatttgttctatttttc
Downstream sequence
tggagaattctgactaaTCCACTAAGCATATATTATTAAAAGAAATACTTTCTGGAATAACCAATGTCCAAAACAGCTAAGTGGAAATTCCCTAGTTAAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate