VISDB Viral Integration Site DataBase

VIS ID

TVIS42000416

Fusion event

EBV-JCAD integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

51392

Orient

+

Integrated sequence

AGACAGCCAGTCCCTGGGCCTGCCAGGGGCCACCTTCTCTAAGAGGGGGCTCTGTGGGCTGGGAGGGCCAGAGGCCTCAGATTCAGCAGTAGTGCTCCCC| |TTTTCCCCCTGGTCCGTCTCCCCTCCTCCCAACTGCTGGAGCCGGTCGGAGGAGGCCGGGGTGTTATCTGCTGACTGAAACCCGTCCCCGCTGACCAGTC

Chromosome

chr10

Cytoband

p11.23

Reference genome

Start

End

30305322/30016393 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-181a-5p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-324-5p ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-590-3p ; hsa-mir-4740-3p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-582-5p ; hsa-mir-4775 ; hsa-mir-873-5p ; hsa-mir-6504-3p ; hsa-mir-656-3p ; hsa-mir-144-3p ; hsa-mir-6882-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-181c-3p

Nearest miRNA

hsa-mir-1265/Upstream/414047; hsa-mir-107/Downstream/352204;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/279245, chr10-CpG: 124/Downstream/42277

Upstream sequence

GCTCAGGAATAACCTGATGAGGGTTTCTTCGTGTTAGGAACTCCAGCATCTGAGTGGGCAGAGGAGCTCTCCGGCTTGCCCCCATTCCTCTGATGCGCCC

Downstream sequence

CTAGCCTGGCCCATAGTTTGGGTTGTTTGGGCAGCCCTGCAGATTCCCTGAGCTGAGGGGCCTCTCTCTGGAGAGTGGGAAAGAATTCTGGCCTTTGTGT