Basic Information
VIS ID
TVIS42000417
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
139535
Orient
+
Integrated sequence
CCCCTATATAGTCACGACCCCACCGAACCAGGCATGATGTAGAATAAAATTTTATGCATCATCTTCTAATCTGTGCCGCTTGGAGGGAAACATGACCACC| |TGAAGTCTGTTAACCAGGTCAGTGGTTTTGTTTCCTTGATAGAGACACAAGGACTGCCAGCCCCATTGGGGAGGGGGGGTGGGTACGGGAGAGTTTGGGC
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
35284899/34995971 (Hg38)
End
35284899/34995971 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/4627306; hsa-mir-107/Downstream/83627;
Nearest TSS
ENST00000439456/Upstream/21987; ENST00000482646/Downstream/75368;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/179656, chr10-CpG: 69/Downstream/93935
Upstream sequence
ccattaaaaagtaggcaaggctgagcacagtggctcatgcctgtaatcccaacactttggagagctgacgtggaagactccttgaggccaggagttgaag
Downstream sequence
actgcttgagtccaggagtttaagaccagccttggcaacatagcaagactctgcctcttcaaaaatataagaattagctagatgtggtggcacacaactg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate