Basic Information
VIS ID
TVIS42000421
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
65720
Orient
+
Integrated sequence
GGACCTGGGCTGGCAGTACACTGACCCTCCCTCTCGCTCGTTAAACAAGGAAATATTCGAACATATGTACTTTACGGCCCTCTGCACCAGTAGTCTGATT| |GGACTTCACACCAGGAAGATTTTTCCGGGTTTCAAACAGAGCAAGTATGCCGGGGGGTGGTTTCACTGGCACGATTGGGCAGGAACAGACCTTTCTATTC
Host Sequence
Chromosome
chr10
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
82053460/80293704 (Hg38)
End
82053460/80293704 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/4741151; hsa-mir-107/Downstream/5970990;
Nearest TSS
ENST00000439456/Upstream/4020; ENST00000416657/Downstream/40067;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/85943, chr10-CpG: 93/Downstream/62742
Nearby gene
MAT1A(-4026) ; ZNF519P1(+4474) ;
Upstream sequence
GTCAATTTCAGGATTCCTAGGGAAGAGTCAGGGGCTGCCTTTTAAAGCAGAAagagtttagagttgacagagccaacagacatcatctagctcaagcttc
Downstream sequence
tgtctagtacgaagttcatcaaaattggccaggaaggccatgacatcctttctccacgtgaatactgcctctggcaggtggctcactacagctgccattc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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