Basic Information
VIS ID
TVIS42000422
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79725
Orient
+
Integrated sequence
ACCTCGAGGTTGGTAGACAGCCTTCGTATGGGGTGTCAGCTGGCCAAAGTCAAGATCAAGTTGATGCTTTTTGCCCCCGACATCGAAATTGATAGTTACA| |TTGACATCTGCCGTGCAAACATTGCATGTGGGGTAAAATGGGAATTCCGGAATCTCAACATTGAAAAAACCAGGATCTTCACCCGTGAGATGGATCAGGC
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
82456478/80696722 (Hg38)
End
82456478/80696722 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/5144169; hsa-mir-107/Downstream/5567972;
Nearest TSS
ENST00000439456/Upstream/46925; ENST00000404547/Downstream/1178592;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/160286, chr10-CpG: 149/Downstream/1177571
Upstream sequence
gaagcaggagaatcacttgaacccaggaggcggaggttgcggtgagccgaaattgcgccactgtactccagcctgggcaacaagagtgaaactcggtctc
Downstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaatacacaaattagccaggcatggtggtgggcacctgtaatcccagctactcgggag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate