VISDB Viral Integration Site DataBase

VIS ID

TVIS42000423

Fusion event

EBV-GRID1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

59702

Orient

-

Integrated sequence

AGGAGTCCAAAACGGCACGCCACCTGCCGTGGGGCGGTGGTGACAGGTCCCGGCTGGCCCGGCGCTTGCTCGCGTTCCTGCCGTTACCCAGGAGAATGGC| |CGCGAGTTTTTTGGCGGGGAGGATGCGGAATGGCGGGGGCGTTTGTCCCACGGGTGAGGGGGAATCGTCGGTTAGGGCCGGCACGAGGTGGTGGGTCTGG

Chromosome

chr10

Cytoband

q23.1

Reference genome

Start

End

87742356/85982599 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-410-3p ; hsa-mir-1277-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-6895-3p ; hsa-mir-138-5p ; hsa-mir-6131 ; hsa-mir-133a-5p ; hsa-mir-3663-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-342-3p ; hsa-mir-6722-5p ; hsa-mir-6768-5p ; hsa-mir-8485 ; hsa-mir-4709-3p ; hsa-mir-4699-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6867-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-642a-5p ; hsa-mir-6826-3p ; hsa-mir-3124-3p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-5196-3p ; hsa-mir-4283 ; hsa-mir-4448 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4530 ; hsa-mir-922 ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-6813-5p ; hsa-mir-6856-5p ; hsa-mir-6085 ; hsa-mir-6758-5p

Nearest miRNA

hsa-mir-1265/Upstream/10430046; hsa-mir-107/Downstream/282095;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1441402, chr10-CpG: 47/Downstream/280284

Upstream sequence

cctgaccaacatggagaaaccctgactctactaaaaatacaaaaattagcctgtcatggtggcaggcacctgtaatcccagctacttgggaggctgaggc

Downstream sequence

aggagaatcacttgaattcagaggcagcggttgcagtgagctgggattgtgccaccacactccagcctgggcgacagagcgagactctgtcccttccggc