VISDB Viral Integration Site DataBase

VIS ID

TVIS42000425

Fusion event

EBV-BMPR1A integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

129216

Orient

+

Integrated sequence

ATCATCAGAACTTTGTCGAGCCTGTCCACGCATTTGTAGGCGGGGAGATGCCACGCATCCCTGTCTTCTCGCTCCAAAGAGAGCCGCCCAAGAAACCCAT| |CCACAGCATTTGAAACGGCCGCCTGGTCCAGCGTTGCCTCCTGGGGGGCCATGCTCAGCAGCTTGTCTCGTGTGAGGTCAAATCGTAGGCTGAGGTAGCA

Chromosome

chr10

Cytoband

q23.2

Reference genome

Start

End

88604514/86844757 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-455-3p ; hsa-mir-656-3p ; hsa-mir-580-3p ; hsa-mir-548l ; hsa-mir-510-3p ; hsa-mir-431-5p ; hsa-mir-3140-3p ; hsa-mir-203a-3p ; hsa-mir-302f ; hsa-mir-3616-5p ; hsa-mir-573 ; hsa-mir-34a-3p ; hsa-mir-1264 ; hsa-mir-574-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5585-3p ; hsa-mir-5011-5p ; hsa-mir-511-3p ; hsa-mir-1273e ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-4459 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-4521 ; hsa-mir-34c-3p ; hsa-mir-1197 ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-8485 ; hsa-mir-6816-3p ; hsa-mir-8080 ; hsa-mir-139-3p ; hsa-mir-8055 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-9500 ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-5584-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-1281 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-660-3p ; hsa-mir-4485-5p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-6832-3p ; hsa-mir-623 ; hsa-mir-5692a ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-1237-3p ; hsa-mir-885-3p ; hsa-mir-1247-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4279 ; hsa-mir-450b-3p ; hsa-mir-4713-3p ; hsa-mir-4722-3p ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-619-5p ; hsa-mir-638 ; hsa-mir-6506-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6802-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-769-3p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-1265/Upstream/579969; hsa-mir-107/Downstream/659124;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/87297, chr10-CpG: 108/Downstream/97801

Nearest cancer related gene

BMPR1A(TSG, No orient, 0)

Upstream sequence

gtaacttgtctctaccaaaaaaaaaaaaaaaaaaattagccaggtgtggcagcatgtgccggcattcccagtttgggaggctgaggcgggaggattgttt

Downstream sequence

gaggttgggagttcgccactgcagtgagccgtgatcgtgccactgcacgctagccactaacaaaatgagacattgtctcacaaacaaaaaCCAAAACAAC